MoDPepInt Server
PDZPepInt - PDZ Interactions
BIF
IFF
PDZPepInt

PDZPepInt - PDZ Interactions

PDZPepInt is a cluster based prediction tool to predict binding peptides of PDZ domains in human, mouse, fly and worm. Total 43 built-in models that cover 226 PDZ domains across the species are available. Peptides are represented as 5 C-terminal sequences of binding proteins. Depending on the user requirement Gene Ontology database can be used for getting reliable interactions. Additionally, it will also consider the C-terminal peptides that are intrinsically unstructured for getting high confidence interactions.

For articles describing the tool refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try PDZPepInt with this example: PDZ interactions (input|result) ?

Input Parameters

?
Note: Some filters require UniProt IDs along with all targeted protein sequences in the FASTA input (check enabled filters).
?
? PDZ Domains: select [all] [none]

Human

Mouse

Drome

Caeel

?

Filters select [all] [none]

Note: Some filters require UniProt IDs along with all targeted protein sequences in the FASTA input (check enabled filters).
? Intrinsically unstructured/disordered region:
? Cellular localization (needs UniProt IDs):

? Description:
? Your Email:
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When using PDZPepInt please cite :

Results are computed with PDZPepInt version 1.0.0