PDZPepInt is a cluster based prediction tool to predict binding peptides of PDZ domains in human, mouse, fly and worm. Total 43 built-in models that cover 226 PDZ domains across the species are available. Peptides are represented as 5 C-terminal sequences of binding proteins. Depending on the user requirement Gene Ontology database can be used for getting reliable interactions. Additionally, it will also consider the C-terminal peptides that are intrinsically unstructured for getting high confidence interactions.

For articles describing the tool and webserver refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

• Kousik Kundu, Martin Mann, Fabrizio Costa, and Rolf Backofen
  MoDPepInt: An interactive webserver for prediction of modular domain-peptide interactions
  Bioinformatics, 2014, in press.
  
• Kousik Kundu and Rolf Backofen
  Cluster based prediction of PDZ-peptide interactions
  BMC Genomics, 15 Suppl 1 pp. S5, 2014.