[Download]
the following interaction table
Input and runtime details for job 9575848 (precomputed example)
Input Parameters
| Protein/Peptide FASTA | [.fa] | ||
| Protein UniProt IDs | [.fa] | ||
| SH3 Domains | ABL, LCK, PIK3R1 | ||
| Step size | 5 |
Filters
| Proline-rich peptides | yes | ||
| Cellular localization (needs UniProt IDs) | yes |
Job ID 9575848 (server version 4.2.2)
 | Job Submitted & Queued | @ Fri Jul 22 10:49:38 CEST 2016 | |
| SH3PepInt Started | @ Fri Jul 22 10:49:42 CEST 2016 | |
| SH3PepInt Finished & Post-Processing | @ Fri Jul 22 10:50:27 CEST 2016 | |
| Job Completed | @ Fri Jul 22 10:50:30 CEST 2016 |
DIRECT ACCESS: http://modpepint.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=9575848&toolName=SH3PepInt ( 30 days expiry )
Description of the job
This is an example for the interaction prediction of human SH3 domains from ABL, LCK and PIK3R1 proteins with the target proteins PIK3C2B, PPP3CA and SYNJ1.
Output download complete results [zip]
Sort by selecting a column name.
| Sequence ID | Position | Sequence | Domain |
|---|---|---|---|
| sp|O00750|P3C2B_HUMAN | 151-165 | CKKLSPPPLPPRASI | ABL, LCK, PIK3R1 |
| sp|O00750|P3C2B_HUMAN | 161-175 | PRASIWDTPPLPPRK | PIK3R1 |
| sp|O00750|P3C2B_HUMAN | 166-180 | WDTPPLPPRKGSPSS | PIK3R1 |
| sp|O00750|P3C2B_HUMAN | 276-290 | RSKTMPPQVPPRTYA | PIK3R1 |
| sp|O00750|P3C2B_HUMAN | 556-570 | NQLPPCPSRMQPKIQ | PIK3R1 |
| sp|O00750|P3C2B_HUMAN | 1421-1435 | PSSHLPSFPSRFVIG | ABL |
| sp|Q08209|PP2BA_HUMAN | 16-30 | RVVKAVPFPPSHRLT | ABL, PIK3R1 |
| sp|Q08209|PP2BA_HUMAN | 1631-1645 | PSLPIRPSRAPSRTP | PIK3R1 |
| sp|Q08209|PP2BA_HUMAN | 2101-2115 | VLPSRRPPPPPVPLL | ABL, PIK3R1 |
Job resubmission
Use the following button if you want to resubmit the job with
altered input or parameterization:
usability assessment
When using SH3PepInt please cite :
- Kousik Kundu, Martin Mann, Fabrizio Costa, and Rolf Backofen
MoDPepInt: An interactive webserver for prediction of modular domain-peptide interactions
Bioinformatics, 2014, in press. - Kousik Kundu, Fabrizio Costa, and Rolf Backofen
A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains
Bioinformatics, 29(13), pp. i335-i343, 2013.
Results are computed with SH3PepInt version 1.0.0
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