MoDPepInt Server
SH3PepInt - Results

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Input and runtime details for job 9575848 (precomputed example)

Input Parameters

	Protein/Peptide FASTA		[.fa]
	Protein UniProt IDs		[.fa]
	SH3 Domains		ABL, LCK, PIK3R1
	Step size		5

Filters

	Proline-rich peptides		yes
	Cellular localization (needs UniProt IDs)		yes

Job ID 9575848 (server version 4.2.2)

	Job Submitted & Queued		@ Fri Jul 22 10:49:38 CEST 2016
	SH3PepInt Started		@ Fri Jul 22 10:49:42 CEST 2016
	SH3PepInt Finished & Post-Processing		@ Fri Jul 22 10:50:27 CEST 2016
	Job Completed		@ Fri Jul 22 10:50:30 CEST 2016

DIRECT ACCESS: http://modpepint.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=9575848&toolName=SH3PepInt ( 30 days expiry )

Description of the job

This is an example for the interaction prediction of human SH3 domains from ABL, LCK and PIK3R1 proteins with the target proteins PIK3C2B, PPP3CA and SYNJ1.

Output download complete results [zip]

[Download] the following interaction table

Sort by selecting a column name.

Sequence ID	Position	Sequence	Domain
sp\|O00750\|P3C2B_HUMAN	151-165	CKKLSPPPLPPRASI	ABL, LCK, PIK3R1
sp\|O00750\|P3C2B_HUMAN	161-175	PRASIWDTPPLPPRK	PIK3R1
sp\|O00750\|P3C2B_HUMAN	166-180	WDTPPLPPRKGSPSS	PIK3R1
sp\|O00750\|P3C2B_HUMAN	276-290	RSKTMPPQVPPRTYA	PIK3R1
sp\|O00750\|P3C2B_HUMAN	556-570	NQLPPCPSRMQPKIQ	PIK3R1
sp\|O00750\|P3C2B_HUMAN	1421-1435	PSSHLPSFPSRFVIG	ABL
sp\|Q08209\|PP2BA_HUMAN	16-30	RVVKAVPFPPSHRLT	ABL, PIK3R1
sp\|Q08209\|PP2BA_HUMAN	1631-1645	PSLPIRPSRAPSRTP	PIK3R1
sp\|Q08209\|PP2BA_HUMAN	2101-2115	VLPSRRPPPPPVPLL	ABL, PIK3R1

Job resubmission

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When using SH3PepInt please cite :

Kousik Kundu, Martin Mann, Fabrizio Costa, and Rolf Backofen
MoDPepInt: An interactive webserver for prediction of modular domain-peptide interactions
Bioinformatics, 2014, in press.
Kousik Kundu, Fabrizio Costa, and Rolf Backofen
A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains
Bioinformatics, 29(13), pp. i335-i343, 2013.

Results are computed with SH3PepInt version 1.0.0