MoDPepInt Server
SH3PepInt - SH3 Interactions
BIF
IFF
SH3PepInt

SH3PepInt - SH3 Interactions

SH3PepInt is an alignment-free, fast and sophisticated graph kernel based tool to predict SH3-peptide interactions. Total 69 built-in models are available for SH3-peptide predictions. It does not need any pre-alignment of the peptides. It computes a window analysis on the query proteins and considers 15 amino acids length peptides. User can change the step size for the window analysis. Depending on the user requirement it uses Gene Ontology database for getting more reliable interactions.

For articles describing the tool refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try SH3PepInt with this example: SH3 interactions (input|result) ?

Input Parameters

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Note: Some filters require UniProt IDs along with all targeted protein sequences in the FASTA input (check enabled filters).
?
? SH3 Domains: select [all] [none]
? Step size:

Filters select [all] [none]

Note: Some filters require UniProt IDs along with all targeted protein sequences in the FASTA input (check enabled filters).
? Proline-rich peptides:
? Cellular localization (needs UniProt IDs):

? Description:
? Your Email:
(optional)
(optional)

When using SH3PepInt please cite :

Results are computed with SH3PepInt version 1.0.0