Input and runtime details for job 2334483 (precomputed example)

Input Parameters

	Protein/Peptide FASTA		[.fa]
	Protein UniProt IDs		[.fa]
	PDZ Domains		DLG1-1_Drome, DLG1-2_Drome, DLG4-1_Human, GIPC1_Mouse, INADL-2_Mouse, NHRF1-1_Human, SNTB1_Human, SNTG2_Human
	Custom PDZ Domain		[.fa]

	Intrinsically unstructured/disordered region		yes
	Cellular localization (needs UniProt IDs)		yes

	Job Submitted & Queued		@ Fri Jul 22 10:50:03 CEST 2016
	PDZPepInt Started		@ Fri Jul 22 10:50:13 CEST 2016
	PDZPepInt Finished & Post-Processing		@ Fri Jul 22 10:50:25 CEST 2016
	Job Completed		@ Fri Jul 22 10:50:27 CEST 2016

This is an example for the PDZ-peptide interaction prediction. PDZ domains from different organisms bind with their respective peptides.

[Download] the following interaction table

Sort by selecting a column name.

Sequence ID	Position	Sequence	Domain
sp\|Q14524\|SCN5A_HUMAN	2012-2016	RESIV	DLG4-1_Human, SNTB1_Human, SNTG2_Human, New-domain
P08510	651-655	IETDV	DLG1-1_Drome, DLG1-2_Drome, New-domain
sp\|P07550\|ADRB2_HUMAN	409-413	NDSLL	NHRF1-1_Human
sp\|Q64151\|SEM4C_MOUSE	2380-2384	IESDV	GIPC1_Mouse, INADL-2_Mouse, New-domain
sp\|P34082\|FAS2_DROME	869-873	KNSAV	DLG1-1_Drome, DLG1-2_Drome, New-domain

Use the following button if you want to resubmit the job with altered input or parameterization:

Please support us by filling this short quality survey for evaluating this

service.

Kousik Kundu, Martin Mann, Fabrizio Costa, and Rolf Backofen
MoDPepInt: An interactive webserver for prediction of modular domain-peptide interactions
Bioinformatics, 2014, in press.
Kousik Kundu and Rolf Backofen
Cluster based prediction of PDZ-peptide interactions
BMC Genomics, 15 Suppl 1 pp. S5, 2014.

Results are computed with PDZPepInt version 1.0.0